Saturday, August 15, 2015

The New Beach Act Needs to Require Both: Rapid qPCR Testing and Water Quality Forecasting


The Beach Act of 2015 as proposed will be requiring faster water-quality testing and reporting. But qPCR test results won't be made available to the public a couple of hours after sampling.
After a sample is taken, the remaining samples in that inspectors 'run' – about 2 hours - will have to be completed. Then they will be driven to the lab, where they can be held within the methods allowable time frame, then processed and analyzed. Then results will be reported to the health deparment, and subsequently posted on the health deparment and state websites.
So, more like mid to late afternoon for results.
That's still, much faster than the current 24-hour delay for getting culture-based results back from the lab. The present laboratory method counts live bacterial colonies growing in a culture for about 24 hours. QPCR only takes a few hours because it measures bacterial DNA – from live and dead cells - rather than cell growth.
Getting test results a few hours after sampling will be transformative. When the method is reliable.
Here are some reasons why the qPCR method is still a work in progress: the lack of a formal standardized method protocol for laboratories using the 2013 EPA methods. The EPA research primarily studied beaches impacted by sewage, not stormwater. qPCR measures dead as well as live cells, so it can test higher than the culture-based methods that count cell growth. And lower, when PCR inhibitors in the water sample – like humic and tannic acids from decaying vegetation in surface water – cause amplification failure.
As these issues are worked out, fundamental change can come by also using predictive models to forecast beach water quality.
Forecasting water quality every day of the week is a cost-effective supplement to sampling. It's been done for years at beaches along the Great Lakes. California began testing their Water Quality Nowcast at three marine beaches this summer.
Weekly sampling is expensive. Public Health has not done well since the recession. More sampling after storms and inadequate federal funding will mean higher state and local taxes, mostly for manpower.
That's why the EPA has been nudging states to use forecasting models to supplement their water sampling since 2012.

Previous blogs about forecasting marine water quality:

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